User contributions
From Biowerkzeug Wiki
- 01:08, 21 April 2011 (diff | hist) . . (+45) . . Analysis software (→MD Analysis libraries) (current)
- 10:28, 22 May 2010 (diff | hist) . . (+99) . . Protein/Membrane system size (math -> manual formatting) (current)
- 10:15, 22 May 2010 (diff | hist) . . (+2) . . Transmembrane protein insertion methods
- 10:13, 22 May 2010 (diff | hist) . . (-2,854) . . Membrane proteins (overview) (current)
- 10:12, 22 May 2010 (diff | hist) . . (+3,235) . . N Transmembrane protein insertion methods (moved insertion methods to extra page)
- 10:11, 22 May 2010 (diff | hist) . . (+3,554) . . N Protein/Membrane system size (estimate num ber of lipids (from SBCBWiki, written by OB))
- 09:58, 22 May 2010 (diff | hist) . . (+3,235) . . N Membrane proteins (methods for setting up membrane protein simulations)
- 13:40, 10 January 2010 (diff | hist) . . (+12) . . m Membranes (→Explicit lipids) (current)
- 13:39, 10 January 2010 (diff | hist) . . (+159) . . Membranes (→Explicit lipids: shameless plug: lipidbook)
- 14:09, 7 February 2009 (diff | hist) . . (+29) . . Analysis software (→Specialized tools)
- 14:07, 7 February 2009 (diff | hist) . . (+32) . . Analysis software (→MD Analysis libraries)
- 14:07, 7 February 2009 (diff | hist) . . (0) . . Analysis software (→MD Analysis libraries)
- 14:07, 7 February 2009 (diff | hist) . . (+578) . . Analysis software (→MD Analysis libraries: LOOS)
- 11:02, 8 December 2008 (diff | hist) . . (+107) . . Help:Editing (→Styles)
- 11:00, 8 December 2008 (diff | hist) . . (+164) . . m Performance (→Single processor performance)
- 10:56, 8 December 2008 (diff | hist) . . (+6) . . m Performance (→Single processor performance)
- 10:54, 8 December 2008 (diff | hist) . . (+50) . . Performance (→Single processor performance)
- 10:53, 8 December 2008 (diff | hist) . . (+691) . . Performance (scaling in main table)
- 10:37, 8 December 2008 (diff | hist) . . (+22) . . MediaWiki:Common.css (table left aligned txt) (current)
- 10:35, 8 December 2008 (diff | hist) . . (+62) . . MediaWiki:Common.css (table caption)
- 10:30, 8 December 2008 (diff | hist) . . (+435) . . Help:Editing (CSS)
- 10:23, 8 December 2008 (diff | hist) . . (+156) . . Performance (→Scaling)
- 10:21, 8 December 2008 (diff | hist) . . (+112) . . Performance (→Scaling)
- 21:15, 7 December 2008 (diff | hist) . . (-1) . . Performance (fixed Phenom GHz)
- 21:15, 7 December 2008 (diff | hist) . . (+89) . . Performance (→Scaling: Phenom)
- 21:12, 7 December 2008 (diff | hist) . . (+55) . . N File:Scaling AMD X4 9840.png (Scaling of Hippo rev 35 walp test on AMD Phenom X4 9840) (current)
- 16:13, 7 December 2008 (diff | hist) . . (+2) . . Calc testjobs linux.sh
- 16:13, 7 December 2008 (diff | hist) . . (-2) . . m Calc testjobs linux.sh
- 16:12, 7 December 2008 (diff | hist) . . (+366) . . Calc testjobs linux.sh (no mpi)
- 16:08, 7 December 2008 (diff | hist) . . (+151) . . Calc testjobs linux.sh (calc_testjobs_linux.sh 2535 2008-12-07 16:07:19Z)
- 16:03, 7 December 2008 (diff | hist) . . (+201) . . m Calc testjobs linux.sh
- 16:00, 7 December 2008 (diff | hist) . . (0) . . Test scaling.py (test_scaling.py 2534 2008-12-07 15:59:59Z)
- 15:53, 7 December 2008 (diff | hist) . . (0) . . File:Scaling Q9550.png (uploaded a new version of "Image:Scaling Q9550.png") (current)
- 15:52, 7 December 2008 (diff | hist) . . (0) . . File:Scaling Q9550.png (uploaded a new version of "Image:Scaling Q9550.png")
- 15:41, 7 December 2008 (diff | hist) . . (+231) . . Talk:Performance (→Scaling)
- 15:39, 7 December 2008 (diff | hist) . . (+105) . . Performance (→Scaling)
- 15:35, 7 December 2008 (diff | hist) . . (+53) . . N File:Scaling E5420.png (walp test rev 35 on dual quad core xeon E5420 2.5 GHz) (current)
- 15:34, 7 December 2008 (diff | hist) . . (+6) . . m Performance (→Scaling)
- 15:33, 7 December 2008 (diff | hist) . . (+226) . . Performance (→Scaling)
- 15:30, 7 December 2008 (diff | hist) . . (+54) . . N File:Scaling Q9550.png (Scaling of WALP test case on Intel Q9550. Hippo rev35.)
- 15:26, 7 December 2008 (diff | hist) . . (+1) . . Test scaling.py
- 15:25, 7 December 2008 (diff | hist) . . (+2,088) . . N Test scaling.py (test_scaling.py 2533 2008-12-07 15:11:10Z)
- 15:23, 7 December 2008 (diff | hist) . . (+237) . . Talk:Performance (→Scaling)
- 13:41, 7 December 2008 (diff | hist) . . (+76) . . Talk:Performance (→Scaling)
- 13:38, 7 December 2008 (diff | hist) . . (+326) . . Talk:Performance (benchmarking scaling)
- 13:37, 7 December 2008 (diff | hist) . . (+3,516) . . N Calc testjobs linux.sh (benchmarking and testing script)
- 12:20, 7 December 2008 (diff | hist) . . (+204) . . Performance (rev35)
- 02:13, 21 November 2008 (diff | hist) . . (+96) . . Performance
- 02:10, 21 November 2008 (diff | hist) . . (+5) . . m Performance
- 02:08, 21 November 2008 (diff | hist) . . (+111) . . m Performance
- 01:53, 21 November 2008 (diff | hist) . . (0) . . Performance (darthtater update (run on empty machine))
- 01:35, 21 November 2008 (diff | hist) . . (+88) . . Performance (Xeon Harpertown 2.5 GHz)
- 01:27, 21 November 2008 (diff | hist) . . (+89) . . Performance (Phenom)
- 20:00, 14 November 2008 (diff | hist) . . (+212) . . Performance (gltph Opteron)
- 19:52, 14 November 2008 (diff | hist) . . (+183) . . Performance (deathspud p3)
- 19:48, 14 November 2008 (diff | hist) . . (+180) . . Performance (deathspud results)
- 19:42, 14 November 2008 (diff | hist) . . (+1) . . Performance (fixed awk)
- 19:38, 14 November 2008 (diff | hist) . . (0) . . m Download
- 19:38, 14 November 2008 (diff | hist) . . (+379) . . N Download (download page)
- 19:35, 14 November 2008 (diff | hist) . . (+15) . . m Main Page (→Hippo)
- 16:03, 14 November 2008 (diff | hist) . . (+247) . . N Talk:Performance (automatic benchmark in distribution?)
- 15:58, 14 November 2008 (diff | hist) . . (-4) . . m Performance
- 15:57, 14 November 2008 (diff | hist) . . (+678) . . Performance (reformatting + caveat + awk script to parse cpuinfo)
- 15:11, 14 November 2008 (diff | hist) . . (+1) . . m Performance
- 15:09, 14 November 2008 (diff | hist) . . (+193) . . Performance (Xeon 2.4)
- 14:54, 14 November 2008 (diff | hist) . . (0) . . m Performance
- 14:49, 14 November 2008 (diff | hist) . . (+720) . . Performance (links to model names; reformatted table)
- 14:27, 14 November 2008 (diff | hist) . . (+71) . . Performance (hippo_p3 on Q)
- 12:22, 14 November 2008 (diff | hist) . . (-3) . . Performance
- 12:22, 14 November 2008 (diff | hist) . . (+209) . . Performance (added old AMD XP)
- 12:13, 14 November 2008 (diff | hist) . . (+631) . . N Performance (performance benchmark, PLEASE ADD YOUR OWN)
- 11:52, 14 November 2008 (diff | hist) . . (+1) . . Main Page (→Hippo)
- 11:52, 14 November 2008 (diff | hist) . . (+17) . . m Main Page (→Hippo)
- 22:47, 20 October 2008 (diff | hist) . . (+307) . . Hippo (added latest U&U paper)
- 15:54, 19 October 2008 (diff | hist) . . (-18) . . Help:Editing (→Images: updated images with Hippo ones; weblinking images does not work here)
- 15:48, 19 October 2008 (diff | hist) . . (-2) . . Help:Editing (→Categories: Charmm -> Hippo :-))
- 15:44, 19 October 2008 (diff | hist) . . (+25) . . Hippo (→Installing the software: OpenMP link)
- 15:42, 19 October 2008 (diff | hist) . . (+5) . . Hippo (→Installing the software)
- 15:42, 19 October 2008 (diff | hist) . . (+59) . . Hippo (→Installing the software: mpich2 link)
- 15:19, 19 October 2008 (diff | hist) . . (+110) . . Hippo (→Installing the software: clarified MPI binaries (after talking to Martin))
- 20:30, 18 October 2008 (diff | hist) . . (+5,624) . . N Hippo setup.sh (script and example usage) (current)
- 20:15, 18 October 2008 (diff | hist) . . (+68) . . Simulations (-> bash script) (current)
- 20:14, 18 October 2008 (diff | hist) . . (+9) . . m Simulations
- 20:13, 18 October 2008 (diff | hist) . . (+132) . . Simulations
- 20:11, 18 October 2008 (diff | hist) . . (+712) . . N Simulations (basic outline of how to run simulations)
- 20:01, 18 October 2008 (diff | hist) . . (+614) . . Files (input file) (current)
- 04:33, 18 October 2008 (diff | hist) . . (+21) . . m Files
- 04:33, 18 October 2008 (diff | hist) . . (+180) . . N Files (basic input files)
- 22:09, 17 October 2008 (diff | hist) . . (+1) . . Hippo (→Installing the software)
- 22:08, 17 October 2008 (diff | hist) . . (+37) . . m Hippo (→Installing the software: links)
- 22:06, 17 October 2008 (diff | hist) . . (+31) . . Hippo (→Installing the software: floating table)
- 22:05, 17 October 2008 (diff | hist) . . (+36) . . Hippo (→Installing the software)
- 22:04, 17 October 2008 (diff | hist) . . (+2,280) . . MediaWiki:Common.css (copied table stuff from http://meta.wikimedia.org/wiki/MediaWiki:Common.css)
- 21:50, 17 October 2008 (diff | hist) . . (0) . . Hippo
- 21:50, 17 October 2008 (diff | hist) . . (+2) . . Hippo (put Features first)
- 21:48, 17 October 2008 (diff | hist) . . (+7) . . Hippo (restructured installation)
- 09:19, 8 October 2008 (diff | hist) . . (+330) . . N Category:Hippo (stub) (current)
- 09:16, 8 October 2008 (diff | hist) . . (+42) . . m Hippo (categories)
- 00:51, 7 October 2008 (diff | hist) . . (+54) . . Hippo (→Enhanced productivity: graphical frontend)
- 10:39, 3 October 2008 (diff | hist) . . (+105) . . Hippo (→Analysis: xyz link)
- 10:34, 3 October 2008 (diff | hist) . . (0) . . m Hippo (→Analysis)
- 10:31, 3 October 2008 (diff | hist) . . (+146) . . Hippo (added folding picture as 'Appetithappen')
- 10:29, 3 October 2008 (diff | hist) . . (+77) . . N File:Gbim.jpg (Folding and insertion of a peptide into a implicit Generalized Born membrane.) (current)
- 10:27, 3 October 2008 (diff | hist) . . (+12) . . Hippo (→Analysis)
- 10:25, 3 October 2008 (diff | hist) . . (+214) . . Hippo (→Analysis: peptidescan picture)
- 10:21, 3 October 2008 (diff | hist) . . (+136) . . N File:Peptidescan.jpg (Output from the trans+rot-scan in Hippo: The adiabatic free energy surface for placing a helical peptide into an implicit Born membrane.) (current)
- 10:14, 3 October 2008 (diff | hist) . . (+924) . . Hippo (→Analysis: added other analysis tools (from manual) + references)
- 10:10, 3 October 2008 (diff | hist) . . (+388) . . Hippo (→References: Daura paper (but Wiley are total wackos - who in their right mind uses greater and smaller signs in a DOI?? Use http://www.w3schools.com/tags/ref_urlencode.asp to encode the entities.)
- 09:44, 3 October 2008 (diff | hist) . . (+26) . . Hippo (→References: SWINK)
- 21:06, 2 October 2008 (diff | hist) . . (+9) . . Main Page (→Hippo: Features)
- 21:05, 2 October 2008 (diff | hist) . . (+6) . . m Main Page (bold faced Hippo)
- 20:56, 2 October 2008 (diff | hist) . . (+3,294) . . N Hippo (stub (taken from manual) + embellished)
- 00:21, 2 July 2008 (diff | hist) . . (+3) . . Biowerkzeug Wiki:About (→The biowerkzeug community sites: fixed forum link) (current)
- 16:40, 1 July 2008 (diff | hist) . . (+2) . . Help:Contents (→Problems?) (current)
- 16:39, 1 July 2008 (diff | hist) . . (+122) . . Help:Contents (→Problems?: sign name)
- 16:38, 1 July 2008 (diff | hist) . . (+29) . . m Help:Contents (→Problems?)
- 13:29, 1 July 2008 (diff | hist) . . (+66) . . Help:Contents (→Problems?: link to Forum Wiki -> Bugs)
- 13:02, 1 July 2008 (diff | hist) . . (+2) . . Help:Contents (corrected forums URL)
- 13:02, 1 July 2008 (diff | hist) . . (+1) . . Help:Contents (→Problems?)
- 13:01, 1 July 2008 (diff | hist) . . (+300) . . Help:Contents (problems?)
- 12:58, 1 July 2008 (diff | hist) . . (+175) . . Help:Editing (→Categories: more details + formatting)
- 12:49, 1 July 2008 (diff | hist) . . (+25) . . m Help talk:Editing (→Missing features: sig) (current)
- 12:48, 1 July 2008 (diff | hist) . . (+191) . . N Help talk:Editing (→Missing features: stuff advertised in Help but not working (yet))
- 12:44, 1 July 2008 (diff | hist) . . (+6) . . m Help:Contents (→The Wiki)
- 15:54, 30 June 2008 (diff | hist) . . (+108) . . Main Page (browse by category)
- 15:50, 30 June 2008 (diff | hist) . . (+230) . . Nm Category:Analysis (New page: Running simulations is often the easy bit. The hard bit is to extract meaningful information from the Gigabytes of trajectory data. Articles in this category give hints on what programs to...) (current)
- 15:49, 30 June 2008 (diff | hist) . . (+46) . . Analysis software (categories)
- 15:48, 30 June 2008 (diff | hist) . . (+4) . . m Analysis software
- 15:47, 30 June 2008 (diff | hist) . . (+4,435) . . N Analysis software (basic analysis list (Woolf Wiki + changes))
- 15:28, 30 June 2008 (diff | hist) . . (+282) . . N Category:Modelling (New page: Articles in this category deal with the question how to create, fix, or improve structures, setup membrane systems, solvate a protein, and generally help you to obtain a starting configura...) (current)
- 15:26, 30 June 2008 (diff | hist) . . (+440) . . N Model building (stub) (current)
- 15:25, 30 June 2008 (diff | hist) . . (+299) . . N Category:Monte Carlo (New page: Articles below describe and discuss the '''Monte Carlo''' ('''MC''') method. Using MC one can sample configurations of a system of many interacting particles according to their (equili...) (current)
- 15:23, 30 June 2008 (diff | hist) . . (+49) . . m Monte Carlo codes
- 15:23, 30 June 2008 (diff | hist) . . (+1) . . m Category:Molecular Dynamics (current)
- 15:22, 30 June 2008 (diff | hist) . . (+300) . . N Category:Molecular Dynamics (New page: The articles below are concerned with '''Molecular Dynamics''' ('''MD'''), a method that simulates a system of many interacting particles by calculating the forces on all atoms at each...)
- 15:20, 30 June 2008 (diff | hist) . . (+56) . . Molecular dynamics codes (current)
- 15:20, 30 June 2008 (diff | hist) . . (+223) . . N Category:Electrostatics (New page: Articles in this category deal with the question of how to calculate and represent the electrostatic field around a molecule that is due to the protein, the inhomogeneous ion distribution ...) (current)
- 15:18, 30 June 2008 (diff | hist) . . (+512) . . N Electrostatics (basic list) (current)
- 15:12, 30 June 2008 (diff | hist) . . (+254) . . N Monte Carlo codes (basic list)
- 15:10, 30 June 2008 (diff | hist) . . (+336) . . N Molecular dynamics codes (basic list)
- 15:03, 30 June 2008 (diff | hist) . . (-27) . . m Main Page (→Visualization: more succinct)
- 15:02, 30 June 2008 (diff | hist) . . (+160) . . Nm Category:Visualization (New page: The '''Visualization''' category contains articles on how to create images of molecular simulations and also how to display other data derived from simulations.) (current)
- 15:01, 30 June 2008 (diff | hist) . . (+151) . . Nm Category:Software (New page: This category contains pages that deal with software packages. Expect to find short introductions, helpful hints, and links how to obtain the software.) (current)
- 15:00, 30 June 2008 (diff | hist) . . (+1,391) . . N Visualization software (new; copied from Woolf wiki)
- 14:55, 30 June 2008 (diff | hist) . . (+64) . . Main Page (→Software: model building and visualization)
- 22:50, 29 June 2008 (diff | hist) . . (+9) . . Biowerkzeug Wiki:About (→The biowerkzeug community sites)
- 22:49, 29 June 2008 (diff | hist) . . (+116) . . Biowerkzeug Wiki:About (name)
- 22:47, 29 June 2008 (diff | hist) . . (+269) . . Help:Contents (→The Wiki: prefs)
- 22:36, 29 June 2008 (diff | hist) . . (+6) . . m Biowerkzeug Wiki:Community Portal (current)
- 22:36, 29 June 2008 (diff | hist) . . (+723) . . N Biowerkzeug Wiki:Community Portal (links)
- 22:26, 29 June 2008 (diff | hist) . . (+19) . . m Biowerkzeug Wiki:General disclaimer (current)
- 22:25, 29 June 2008 (diff | hist) . . (0) . . m Biowerkzeug Wiki:General disclaimer (Protected "Biowerkzeug Wiki:General disclaimer": only Biowerkzeug Ltd should be able to change this [edit=sysop:move=sysop])
- 22:24, 29 June 2008 (diff | hist) . . (+680) . . N Biowerkzeug Wiki:General disclaimer (basic disclaimer)
- 22:07, 29 June 2008 (diff | hist) . . (+745) . . N Biowerkzeug Wiki:About (basic info)
- 22:04, 29 June 2008 (diff | hist) . . (+19) . . Biowerkzeug Wiki:Privacy policy (help cat) (current)
- 22:04, 29 June 2008 (diff | hist) . . (0) . . m Biowerkzeug Wiki:Privacy policy (Protected "Biowerkzeug Wiki:Privacy policy": protect page so that only sysops can edite them: Not everyone should be able to state company policy. [edit=sysop:move=sysop] [cascading])
- 22:01, 29 June 2008 (diff | hist) . . (+820) . . N Biowerkzeug Wiki:Privacy policy (basic privacy policy)
- 21:51, 29 June 2008 (diff | hist) . . (+206) . . N Category:Help (New page: This category contains pages that tell you how to work with this Wiki; for instance, how to format entries in Wiki syntax, how to add images, but you can also learn more about the ''biower...) (current)
- 21:49, 29 June 2008 (diff | hist) . . (+19) . . Help:Editing (category help)
- 21:45, 29 June 2008 (diff | hist) . . (-1) . . Help talk:Contents (→Extensions) (current)
- 21:44, 29 June 2008 (diff | hist) . . (+188) . . N Help talk:Contents (special extensions page?)
- 21:43, 29 June 2008 (diff | hist) . . (+1,091) . . N Help:Contents (basic instructions)
- 21:29, 29 June 2008 (diff | hist) . . (+266) . . N Biowerkzeug Wiki:Site support (link to com site)
- 21:26, 29 June 2008 (diff | hist) . . (+222) . . Main Page (→Software: new section)
- 21:21, 29 June 2008 (diff | hist) . . (+146) . . Main Page (formatting: put each section into its own div id="xxx" class="hauptseite-LINKS/RECHTS")
- 21:11, 29 June 2008 (diff | hist) . . (+9) . . m Help:Editing (→Links)
- 20:54, 29 June 2008 (diff | hist) . . (+458) . . N User:Oliver (minimum info about myself) (current)
- 20:47, 29 June 2008 (diff | hist) . . (+533) . . Help:Editing (→Links: moved MediaWiki to the Links section)
- 18:05, 29 June 2008 (diff | hist) . . (+140) . . Main Page (use de wikipedia style sheet for boxes)
- 17:54, 29 June 2008 (diff | hist) . . (+3,084) . . N MediaWiki:Common.css (copied 'Hauptseite' css from http://de.wikipedia.org/wiki/MediaWiki:Common.css)
- 17:43, 29 June 2008 (diff | hist) . . (+138) . . Main Page (relabeling, reshuffling (Hippo should be first))
- 16:55, 29 June 2008 (diff | hist) . . (+7,427) . . N Help:Editing (copied Help page from Woolflab wiki)
- 16:54, 29 June 2008 (diff | hist) . . (+251) . . Main Page (ground rules; MediaWiki links will be moved to Edit help)
- 16:38, 29 June 2008 (diff | hist) . . (+138) . . Main Page (renamed 'Molec Mechanics' --> 'Molec simulations'; added box for Visualization)
- 21:46, 27 June 2008 (diff | hist) . . (+22) . . N Solvent (Redirecting to Solvents) (current)
- 21:45, 27 June 2008 (diff | hist) . . (+2) . . Membranes
- 21:44, 27 June 2008 (diff | hist) . . (+989) . . N Membranes (basic layout + testing of biblio (it works! yay!))
- 21:29, 27 June 2008 (diff | hist) . . (0) . . Solvents (current)
- 21:28, 27 June 2008 (diff | hist) . . (+111) . . N Category:Solvents (stub) (current)
- 21:27, 27 June 2008 (diff | hist) . . (+24) . . m Solvents
- 21:24, 27 June 2008 (diff | hist) . . (+138) . . N Molecular dynamics (basic layout)
- 21:09, 27 June 2008 (diff | hist) . . (+160) . . Main Page (formatting: double columned (see de.wikipedia.org main page); still nedd css)
- 20:57, 27 June 2008 (diff | hist) . . (+560) . . N Solvents (basic structure)
- 20:52, 27 June 2008 (diff | hist) . . (+127) . . Main Page (basic layout)