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• Membranes
  == Explicit lipids == Force-field parameters for lipids are often not distributed with the standard force field files but can be fo
  1 KB (154 words) - 13:40, 10 January 2010
• Membrane proteins
  [[Category:Lipids]] # obtain parameters (for lipids see, for instance, [http://lipidbook.bioch.ox.ac.uk Lipidbook])
  381 bytes (48 words) - 10:13, 22 May 2010
• Protein/Membrane system size
  Once you've decided on box dimensions and number of lipids you can use any of the [[Transmembrane protein insertion methods]] methods ...ayer composition. Have you got [[Lipid FFDB|force field parameters for the lipids]]?
  4 KB (603 words) - 10:28, 22 May 2010
• Transmembrane protein insertion methods
  ; Tielemann's "shrinking an exploded bilayer": Scale all COM coordinates of lipids to increase space ("explode"), insert peptide, shrink via MD (see recent Ti [[Category:Lipids]]
  3 KB (458 words) - 15:32, 12 October 2010