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• Main Page
  ...iscusses biomolecular simulations with '''[[Hippo]]''' and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and compleme * [[Simulations]]
  2 KB (281 words) - 15:08, 18 November 2008
• Molecular dynamics codes
  ...codes available to the academic community to perform [[Molecular dynamics simulations]] of biological molecules. For all codes listed the source code is availabl [[Category:Molecular Dynamics]]
  392 bytes (47 words) - 15:20, 30 June 2008
• Analysis software
  Running simulations is often the easy bit. The hard bit is to extract meaningful information fr Many of the [[Molecular dynamics software|MD packages]] come with their own analysis tools or scripting lang
  5 KB (747 words) - 01:08, 21 April 2011
• Hippo
  * [[Molecular dynamics]] (MD) in NVT, NPT, NVE ensembles <cite>Proteins2008</cite> ...lica exchange simulations]] (REXMD). If you just want to run multithreaded simulations just use the standard binaries (which are all compiled with [http://www.ope
  8 KB (1,118 words) - 13:49, 13 November 2008
• Transmembrane protein insertion methods
  Published methods for setting up membrane protein simulations; please add more. ...(see recent Tieleman review). ''Setting up and running molecular dynamics simulations of membrane proteins.'' Kandt C, Ash WL, Tieleman DP. Methods '''41''' (200
  3 KB (458 words) - 15:32, 12 October 2010