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This Wiki discusses biomolecular simulations with [[Hippo]] and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the [http://forums.biowerkzeug.org forums]. | This Wiki discusses biomolecular simulations with '''[[Hippo]]''' and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the [http://forums.biowerkzeug.org forums]. | ||
Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips | Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips and tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the ''discussion'' page that accompanies every article (look in the top menu bar). We only ask you to [[Special:Userlogin|register]] when you edit pages. See [[Help:Editing|Help→Editing]] to get started on contributing to this community resource. | ||
Follow the links below, use the search on the left, or browse articles by [[Special:Categories|category]]. | |||
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<div class="hauptseite-links"> | <div id="Hippo" class="hauptseite-links"> | ||
== Hippo == | == Hippo == | ||
<div class="inhalt"> | <div class="inhalt"> | ||
[[Image:Hippopotamus.jpg|thumb|right|Not this hippo.]] | |||
* [[Hippo|Features]] | |||
* [[Download]] | |||
* [[Simulations]] | * [[Simulations]] | ||
* [[Analysis]] | * [[Analysis]] | ||
* [[Graphical interface]] | * [[Graphical interface]] | ||
* [[Files | * [[Files]] | ||
* [[Performance]] | |||
</div> | </div> | ||
</div> | |||
<div id="Methods" class="hauptseite-links"> | |||
== Methods == | == Methods == | ||
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<div class="hauptseite-rechts"> | <div id="Simulation protocols" class="hauptseite-rechts"> | ||
== Simulation protocols == | == Simulation protocols == | ||
<div class="inhalt"> | <div class="inhalt"> | ||
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* [[Free energy calculations]] | * [[Free energy calculations]] | ||
* [[Transition path sampling]] | * [[Transition path sampling]] | ||
</div> | |||
</div> | </div> | ||
<div id="Visualization" class="hauptseite-rechts"> | |||
== Visualization == | == Visualization == | ||
<div class="inhalt"> | <div class="inhalt"> | ||
* | * [[Visualization software|Software]] | ||
* | * [[Visualization tutorial|tutorial]] with [[VMD]] | ||
* [[Movie tutorial]] | * [[Movie tutorial]] | ||
</div> | </div> | ||
</div> | </div> | ||
<div id="Software" class="hauptseite-rechts"> | |||
== Software == | |||
<div class="inhalt"> | |||
* [[Molecular dynamics codes]] | |||
* [[Monte Carlo codes]] | |||
* [[Electrostatics]] and [[Brownian dynamics]] | |||
* [[Model building]] | |||
* [[Visualization software|Visualization]] | |||
* [[Analysis software]] | |||
</div> | |||
</div> | |||
|} | |} | ||
</div> | </div> | ||
__NOTOC__ | __NOTOC__ | ||
Latest revision as of 15:08, 18 November 2008
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This Wiki discusses biomolecular simulations with Hippo and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the forums. Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips and tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the discussion page that accompanies every article (look in the top menu bar). We only ask you to register when you edit pages. See Help→Editing to get started on contributing to this community resource. Follow the links below, use the search on the left, or browse articles by category. | |
Hippo |
Simulation protocols
Visualization |
