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This Wiki discusses biomolecular simulations with '''[[Hippo]]''' and other molecular dynamics/Monte Carlo codes. It serves as a repository for the community and complements the [http://forums.biowerkzeug.org forums].
Please contribute your own knowledge to this Wiki: If anything is unclear and you know how to write it better – change it. If you have useful tips and tricks – share them with everyone else. If you have comments on any article in this Wiki – start a discussion on the ''discussion'' page that accompanies every article (look in the top menu bar). We only ask you to [[Special:Userlogin|register]] when you edit pages. See [[Help:Editing|Help→Editing]] to get started on contributing to this community resource.
Follow the links below, use the search on the left, or browse articles by [[Special:Categories|category]].
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<div id="Hippo" class="hauptseite-links">
== Hippo ==
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[[Image:Hippopotamus.jpg|thumb|right|Not this hippo.]]
* [[Hippo|Features]]
* [[Download]]
* [[Simulations]]
* [[Analysis]]
* [[Graphical interface]]
* [[Files]]
* [[Performance]]
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<div id="Methods" class="hauptseite-links">
== Methods ==
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* [[Molecular dynamics]]
* [[Monte Carlo]]
* [[Force fields]]
* [[Algorithms]]
* [[Solvents]]
* [[Membranes]]
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<div id="Simulation protocols" class="hauptseite-rechts">
== Simulation protocols ==
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* [[Globular proteins]] in solvent
* [[Membrane proteins]] in membrane and solvent
* [[Free energy calculations]]
* [[Transition path sampling]]
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<div id="Visualization" class="hauptseite-rechts">
== Visualization ==
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* [[Visualization software|Software]]
* [[Visualization tutorial|tutorial]] with [[VMD]]
* [[Movie tutorial]]
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<div id="Software" class="hauptseite-rechts">
== Software ==
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* [[Molecular dynamics codes]]
* [[Monte Carlo codes]]
* [[Electrostatics]] and [[Brownian dynamics]]
* [[Model building]]
* [[Visualization software|Visualization]]
* [[Analysis software]]
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